Why not just use four pieces of high density foam? The bottom boat is tied to the trailer, the top boat has straps that run lengthwise around the fore and aft beams to hold the boat together. This worked just fine and no damage from Austin, TX to Key Largo, FL and back (about 3,200 miles)....

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Doublestack @ Tradewinds

Bo Kersey
Corsair 31-1D 276